GMOD

Tutorials from the world of the Generic Model Organism Database (GMOD)

GMOD is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data, many of which are directly interoperable.

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

comment   Community Matrix Chat

Material

JBrowse 1

Learn to use JBrowse v1 here.

MAKER

Genome Annotation with MAKER.

InterMine

InterMine is a data warehouse you can query for interesting features and data.

Apollo v2

Apollo is a collaborative, real time genome annotation editor.

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Frederick Tan

Ava Hoffman

Bazante Sanders

Elizabeth Humphries

Mateo Boudet

Robert Meller

Erwan Corre

Katherine Cox

Yo Yehudi

Simon Gladman

Stéphanie Robin

Anton Nekrutenko

Anthony Bretaudeau

Nathan Dunn

Helena Rasche

Miaomiao Zhou

Delphine Lariviere

Torsten Seemann

Alexandre Cormier

Candace Savonen

Natalie Kucher

Daniela Butano

Anna Syme

Bérénice Batut

Avans Hogeschool

Saskia Hiltemann

Laura Leroi

Funding

These individuals or organisations provided funding support for the development of this resource

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

NHGRI GDS Community Network

NHGRI ANVIL