FAIR Data, Workflows, and Research

These lessons will teach you how to make your research objects more FAIR with practical, hands-on advice.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Material

FAIR Data Management

The FAIR (Findable, Accessible, Interoperable, Reusable) data stewardship created the foundation for sharing and publishing digital assets. These lessons will apply to machine accessibility and emphasize that all digital assets should share data in a way that will enable maximum use and reuse.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR in a nutshell
Making clinical datasets FAIR
Sequence data submission to ENA
FAIR data management solutions
FAIR Galaxy Training Material
FAIR Bioimage Metadata
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
FAIRification of an RNAseq dataset

Make workflows FAIR with RO-Crate

This section brought to you by the BY-COVID project, and will teach you how to make your research objects more FAIR with practical, hands-on advice.

Lesson Slides Hands-on Recordings Input dataset Workflows
RO-Crate - Introduction
Workflow Run RO-Crate Introduction
Exporting Workflow Run RO-Crates from Galaxy
RO-Crate in Python
Best practices for workflows in GitHub repositories
Submitting workflows to LifeMonitor

FAIR Pointers

This series of lessons will tackle FAIR from the perspective of the 15 FAIR Principles published in 2016. You will learn about: FAIR and its origins The FAIR Principles and its basic characteristics.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR and its Origins
Metadata
Data Registration
Access
Persistent Identifiers

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Data management in Medicinal Chemistry

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoSimone Leo avatar Simone Leoorcid logoLuca Pireddu avatar Luca Piredduorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoPaul De Geest avatar Paul De Geestorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowicz

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Laura Cooper avatar Laura Cooperorcid logoPhilippe Rocca-Serra avatar Philippe Rocca-Serraorcid logoMunazah Andrabi avatar Munazah Andrabiorcid logoSara Morsy avatar Sara MorsySandra Ng avatar Sandra Ngorcid logoPeter Sefton avatar Peter Seftonorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoPaul De Geest avatar Paul De Geestorcid logoRobert Andrews avatar Robert Andrewsorcid logoNick Juty avatar Nick Jutyorcid logoBranka Franicevic avatar Branka Franicevicorcid logoBruno P. Kinoshita avatar Bruno P. KinoshitaJulia Jakiela avatar Julia Jakielaorcid logoEli Chadwick avatar Eli Chadwickorcid logoMarco Enrico Piras avatar Marco Enrico Pirasorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoAndrew Mason avatar Andrew Masonorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoHelena Rasche avatar Helena RascheTim Beck avatar Tim Beckorcid logoSaskia Lawson-Tovey avatar Saskia Lawson-ToveyKorneel Hens avatar Korneel Hensorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaSonal Henson avatar Sonal Hensonorcid logoSimone Leo avatar Simone LeoLaura Cooper avatar Laura Cooperorcid logoXenia Perez Sitja avatar Xenia Perez Sitjaorcid logoNicola Soranzo avatar Nicola SoranzoKellie Snow avatar Kellie Snoworcid logoLuca Pireddu avatar Luca Pireddu

Funders

This material was funded by:

DASH UK avatar DASH UKBeYond-COVID avatar BeYond-COVIDEuroScienceGateway avatar EuroScienceGateway