Anup Kumar

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Statistics and machine learning

Tutorials

• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 🧐
• Epigenetics / Formation of the Super-Structures on the Inactive X 🧐
• Statistics and machine learning / Train and Test a Deep learning image classifier with Galaxy-Ludwig 🧐
• Statistics and machine learning / Regression in Machine Learning ✍️
• Statistics and machine learning / Deep Learning (Part 1) - Feedforward neural networks (FNN) 🧐
• Statistics and machine learning / Image classification in Galaxy with fruit 360 dataset 🧐
• Statistics and machine learning / Basics of machine learning ✍️ 🧐
• Statistics and machine learning / Clustering in Machine Learning ✍️ 🧐
• Statistics and machine learning / Introduction to deep learning ✍️
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace ✍️ 🧐
• Statistics and machine learning / PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis 🧐
• Statistics and machine learning / Deep Learning (Part 2) - Recurrent neural networks (RNN) 🧐
• Statistics and machine learning / Introduction to Machine Learning using R 🧐
• Statistics and machine learning / Classification in Machine Learning ✍️ 🧐
• Statistics and machine learning / A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy ✍️ 🧐
• Statistics and machine learning / Machine learning: classification and regression ✍️
• Statistics and machine learning / Age prediction using machine learning ✍️
• Statistics and machine learning / Deep Learning (Part 3) - Convolutional neural networks (CNN) 🧐
• Sequence analysis / Quality Control 🧐

Slides

• Statistics and machine learning / Feedforward neural networks (FNN) Deep Learning - Part 1 🧐
• Statistics and machine learning / Image classification in Galaxy with fruit 360 dataset 🧐
• Sequence analysis / Mapping 🧐

Video Recordings

• Statistics and machine learning / Regression in Machine Learning 💬 🗣
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 💬 🗣
• Statistics and machine learning / Classification in Machine Learning 💬 🗣

Events

• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

33 Merged Pull Requests

See all of the github Pull Requests and github Commits by Anup Kumar.

• Remove the dreprecated`searchCV` option in the Pipeline builder tool
  statistics
• Update plot confusion matrix tool's version in the workflow
  statistics
• Update confusion matrices
  statistics
• Tutorial for fine-tuning protein LLM
  statistics
• Upgrade tool versions for Galaxy-ML 1.0
  statistics

Reviewed 24 PRs

We love our community reviewing each other's work!

• Add new Tutorial - Using Ludwig Experiment to build Image Classifier from MNIST dataset
  template-and-tools
  statistics
• [WIP] Event page Galaxy Training Academy
  template-and-tools
• Tutorial for fine-tuning protein LLM
  statistics
• Updated CNN workflow to use the most recent version of the tools. Add…
  statistics
• Update ChIP-Seq tutorial with latest tool versions and links
  epigenetics

External Links

Favourite Topics

Favourite Formats