Paul Zierep

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Microbiome
• Learning Pathway: Building and Annotating Metagenome-Assembled Genomes (MAGs) from Metagenomics Reads

Tutorials

• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community ✍️
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community ✍️
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community ✍️ 🧐
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community ✍️
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
• Genome Annotation / Secondary metabolite discovery ✍️ 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Microbiome / MGnify v5.0 Amplicon Pipeline 🧐
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition ✍️ 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data ✍️ 🧐
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data ✍️ 🧐
• Microbiome / Assembly of metagenomic sequencing data ✍️ 🧐
• Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
• Microbiome / Binning of metagenomic sequencing data ✍️ 🧐
• Microbiome / Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️ 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 📝 🧐
• Development in Galaxy / Adding and updating best practice metadata for Galaxy tools using the bio.tools registry ✍️ 🧐

Slides

• Microbiome / Introduction to Microbiome Analysis ✍️

FAQs

• Force a tool to process collection jobs one by one instead of using the collection as input
• Merge Reads for Co/Grouped Assembly

Video Recordings

• Microbiome / Calculating α and β diversity from microbiome taxonomic data 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 💬 🗣

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2025 🧑‍🏫
• From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

24 Merged Pull Requests

See all of the github Pull Requests and github Commits by Paul Zierep.

• Minor fix for metagenomic assembly tutorial
  microbiome
• Binning tutorial update
  template-and-tools
  microbiome
• Add faq to force map over
  faqs
• Add Fastq GroupMerge FAQ
  faqs
• Update microbiome gta2025
  template-and-tools

Reviewed 20 PRs

We love our community reviewing each other's work!

• [Microbiome] Add learning pathway for MAGs building and annotation
  template-and-tools
• Binning tutorial update
  template-and-tools
  microbiome
• Update tutorial.md - Assembly
  assembly
• Add faq to force map over
  faqs
• Update metagenomics assembly tutorial
  microbiome

News

External Links

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