Niall Beard
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Tutorials
- Sequence analysis / Mapping 🧐
- Transcriptomics / Differential abundance testing of small RNAs 🧐
- Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
- Transcriptomics / Reference-based RNA-Seq data analysis 🧐
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection 🧐
- Microbiome / 16S Microbial Analysis with mothur (extended) 🧐
- Microbiome / Analyses of metagenomics data - The global picture 🧐
- Genome Annotation / Genome Annotation 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training 🧐
- Using Galaxy and Managing your Data / Using dataset collections 🧐
- Using Galaxy and Managing your Data / Extracting Workflows from Histories 🧐
- Using Galaxy and Managing your Data / Rule Based Uploader: Advanced 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 🧐
- Development in Galaxy / JavaScript plugins 🧐
- Development in Galaxy / Data source integration 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Generic plugins 🧐
- Assembly / Making sense of a newly assembled genome 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Introduction to Galaxy Analyses / IGV Introduction 🧐
- Introduction to Galaxy Analyses / From peaks to genes 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- Introduction to Galaxy Analyses / NGS data logistics 🧐
- Ecology / RAD-Seq de-novo data analysis 🧐
- Ecology / RAD-Seq Reference-based data analysis 🧐
- Ecology / RAD-Seq to construct genetic maps 🧐
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Contributing to the Galaxy Training Material / Contributing to the Galaxy Training Network with GitHub 🧐
- Contributing to the Galaxy Training Material / Including a new topic 🧐
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface 🧐
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website 🧐
- Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
- Epigenetics / Identification of the binding sites of the Estrogen receptor 🧐
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) 🧐
- Epigenetics / DNA Methylation data analysis 🧐
- Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 🧐
- Variant Analysis / Calling variants in diploid systems 🧐
- Variant Analysis / Mapping and molecular identification of phenotype-causing mutations 🧐
- Variant Analysis / Calling variants in non-diploid systems 🧐
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 🧐
- Variant Analysis / Microbial Variant Calling 🧐
- Variant Analysis / Calling very rare variants 🧐
- Statistics and machine learning / Interval-Wise Testing for omics data 🧐
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method 🧐
- Proteomics / Secretome Prediction 🧐
- Proteomics / Peptide and Protein ID using OpenMS tools 🧐
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 🧐
- Proteomics / Metaproteomics tutorial 🧐
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 🧐
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 🧐
- Proteomics / Protein FASTA Database Handling 🧐
- Galaxy Server administration / Galaxy Database schema 🧐
- Galaxy Server administration / Ansible 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
Slides
- Sequence analysis / Quality Control 🧐
- Sequence analysis / Mapping 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Development in Galaxy / Galaxy Interactive Environments 🧐
- Development in Galaxy / Prerequisites for building software/conda packages 🧐
- Development in Galaxy / Tool Dependencies and Containers 🧐
- Development in Galaxy / Galaxy Code Architecture 🧐
- Development in Galaxy / Tool development and integration into Galaxy 🧐
- Development in Galaxy / Tool Shed: sharing Galaxy tools 🧐
- Development in Galaxy / Galaxy Interactive Tours 🧐
- Development in Galaxy / Tool Dependencies and Conda 🧐
- Development in Galaxy / Scripting Galaxy using the API and BioBlend 🧐
- Development in Galaxy / Visualizations: JavaScript Plugins 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Generic plugins 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
- Contributing to the Galaxy Training Material / Creating Slides 🧐
- Galaxy Server administration / User, Role, Group, Quota, and Authentication managment 🧐
- Galaxy Server administration / Server: Other 🧐
- Galaxy Server administration / Docker and Galaxy 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
GitHub Activity
github Issues Reported
1 Merged Pull Requests
See all of the github Pull Requests and github Commits by Niall Beard.
Reviewed 3 PRs
We love our community reviewing each other's work!
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schema.org annotation: use Course and add more properties
template-and-tools -
Add some more JSON-LD Terms
work-in-progresstemplate-and-tools -
Added schema.org annotations for training materials
