Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Bacterial Genome Annotation | |||||
Genome annotation with Prokka | |||||
Identification of AMR genes in an assembled bacterial genome | |||||
Refining Genome Annotations with Apollo (prokaryotes) | |||||
Essential genes detection with Transposon insertion sequencing |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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From small to large-scale genome comparison | |||||
Comparative gene analysis in unannotated genomes |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche Simon Gladman Anthony BretaudeauContributors
This material was contributed to by:
Helena Rasche Erwan Corre Anton Nekrutenko Anna Syme Nathan Dunn Esteban Perez-Wohlfeil Jonathan Kreplak Paul Zierep Torsten Seemann Twishi Gulati Romane LIBOUBAN Bérénice Batut Mateo Boudet Kenji Fujihara Anika Erxleben Maria Doyle Bazante Sanders Laura Leroi Björn Grüning Delphine Lariviere Alexandre Cormier Anthony Bretaudeau Saskia Hiltemann Felicitas Kindel Miaomiao Zhou Simon Gladman Stéphanie RobinFunding
These individuals or organisations provided funding support for the development of this resource