Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Kenji Fujihara

Torsten Seemann

Paul Zierep

Simon Gladman

Jasper Ouwerkerk

Anna Syme

Bérénice Batut

Twishi Gulati

Teresa Müller

Simon Bray

Anika Erxleben

Saskia Hiltemann

Stéphanie Robin

Anthony Bretaudeau

Nicola Soranzo

Erwan Corre

Ekaterina Polkh

Delphine Lariviere

Nathan Dunn

William Durand

Bazante Sanders

Felicitas Kindel

Romane LIBOUBAN

Cristóbal Gallardo

Niall Beard

Alexandre Cormier

Gildas Le Corguillé

Esteban Perez-Wohlfeil

Miaomiao Zhou

Jonathan Kreplak

Helena Rasche

Mateo Boudet

Laura Leroi

Anton Nekrutenko

Deepti Varshney

Björn Grüning

Maria Doyle

Funding

These individuals or organisations provided funding support for the development of this resource

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

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IFB

ELIXIR Europe