Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Essential genes detection with Transposon insertion sequencing |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Comparative gene analysis in unannotated genomes |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Torsten Seemann
Simon Bray
Paul Zierep
Jasper Ouwerkerk
Cristóbal Gallardo
Maria Doyle
Jonathan Kreplak
Romane LIBOUBAN
Guillaume Gautreau
Hélène Chiapello
Gildas Le Corguillé
Delphine Lariviere
Laura Leroi
Björn Grüning
Niall Beard
Miaomiao Zhou
Teresa Müller
Saskia Hiltemann
Helena Rasche
Alexandre Cormier
Valentin Loux
Stéphanie Robin
Anna Syme
Simon Gladman
Mateo Boudet
Erwan Corre
Bérénice Batut
Anthony Bretaudeau
Twishi Gulati
Ekaterina Polkh
Nathan Dunn
Anika Erxleben
William Durand
Anton Nekrutenko
Esteban Perez-Wohlfeil
Nicola Soranzo
Deepti Varshney
Kenji Fujihara
Felicitas Kindel
Bazante Sanders
Funding
These individuals or organisations provided funding support for the development of this resource
