Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Stéphanie Robin

Simon Bray

Helena Rasche

Teresa Müller

Jonathan Kreplak

Mateo Boudet

Cristóbal Gallardo

Nicola Soranzo

Saskia Hiltemann

William Durand

Torsten Seemann

Simon Gladman

Björn Grüning

Anton Nekrutenko

Anika Erxleben

Bazante Sanders

Laura Leroi

Esteban Perez-Wohlfeil

Erwan Corre

Romane LIBOUBAN

Felicitas Kindel

Maria Doyle

Deepti Varshney

Miaomiao Zhou

Niall Beard

Nathan Dunn

Alexandre Cormier

Anthony Bretaudeau

Jasper Ouwerkerk

Ekaterina Polkh

Paul Zierep

Twishi Gulati

Kenji Fujihara

Delphine Lariviere

Bérénice Batut

Gildas Le Corguillé

Anna Syme

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

ELIXIR Europe

Avans

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.