Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Hélène Chiapello

Delphine Lariviere

Torsten Seemann

Valentin Loux

Bazante Sanders

Bérénice Batut

Saskia Hiltemann

Erwan Corre

Deepti Varshney

Guillaume Gautreau

Cristóbal Gallardo

William Durand

Nicola Soranzo

Gildas Le Corguillé

Anthony Bretaudeau

Ekaterina Polkh

Anton Nekrutenko

Esteban Perez-Wohlfeil

Paul Zierep

Mateo Boudet

Jonathan Kreplak

Miaomiao Zhou

Anika Erxleben

Nathan Dunn

Anna Syme

Kenji Fujihara

Felicitas Kindel

Twishi Gulati

Stéphanie Robin

Björn Grüning

Niall Beard

Helena Rasche

Romane LIBOUBAN

Simon Bray

Teresa Müller

Simon Gladman

Maria Doyle

Jasper Ouwerkerk

Laura Leroi

Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB

Avans

ELIXIR Europe