Yvan Le Bras
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Foundations of Data Science
- Topic: Ecology
- Topic: Sequence analysis
- Learning Pathway: Introduction to Galaxy and Ecological data analysis
- Learning Pathway: Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery
Tutorials
- Galaxy Server administration / Galaxy Monitoring with Reports 🧐
- Using Galaxy and Managing your Data / RStudio in Galaxy 🧐
- Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝 🧐
- Ecology / Phylodiversity analysis quick tutorial ✍️ 🧐
- Ecology / Sentinel 2 biodiversity ✍️ 🧐
- Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️ 🧐
- Ecology / RAD-Seq to construct genetic maps ✍️ 🧐
- Ecology / Champs blocs indicators ✍️ 🧐
- Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
- Ecology / Species distribution modeling ✍️ 🧐
- Ecology / RAD-Seq de-novo data analysis ✍️ 🧐
- Ecology / Regional GAM ✍️ 🧐
- Ecology / Metabarcoding/eDNA through Obitools ✍️ 🧐
- Ecology / Obis marine indicators ✍️ 🧐
- Ecology / Ecoregionalization workflow tutorial ⚙️ 🧐
- Ecology / Life Traits Ecoregionalization workflow ✍️ 🧐
- Ecology / RAD-Seq Reference-based data analysis ✍️ 🧐
- Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
- Ecology / Taxonomic Analysis of eDNA 🧐
- Ecology / Cleaning GBIF data for the use in Ecology ✍️ 🧐
- Ecology / Biodiversity data exploration ✍️ 🧐
- Ecology / Cleaning GBIF data using OpenRefine ✍️ 🧐
- Ecology / QGIS Web Feature Services ✍️ 🧐
- Ecology / Data submission using ENA upload Tool ✍️ ⚙️ 🧐
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Epigenetics / ATAC-Seq data analysis 🧐
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 🧐
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 🧐
- Climate / Visualize Climate data with Panoply netCDF viewer 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- Development in Galaxy / Galaxy Interactive Tools ✍️
- FAIR Data, Workflows, and Research / RO-Crate in Python 🧐
- FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 🧐
- FAIR Data, Workflows, and Research / Submitting workflows to LifeMonitor 🧐
- FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories 🧐
- Ecology / Production d'indicateurs champs de bloc ✍️ 🧐
Slides
- Galaxy Server administration / Server: Other 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Variant Analysis / Introduction to Variant analysis ✍️
- Epigenetics / Introduction to DNA Methylation data analysis ✍️
- Climate / The Pangeo ecosystem 🧐
- Climate / Pangeo ecosystem 101 for everyone 🧐
FAQs
- It says I already have an account when registering for ecology.usegalaxy.eu
- Changer le type de données
- Importer via un lien
- Créer un nouvel history
- Launch RStudio
- Stop RStudio
Video Recordings
GitHub Activity
github Issues Reported
113 Merged Pull Requests
See all of the github Pull Requests and github Commits by Yvan Le Bras.
-
Update metadata.yaml to add Galaxy Ecology ref & data access and mngt
ecology -
Update tutorial.md fix typo.. on the title...
ecology -
try to rePR phylodiversity tuto
template-and-toolsecology -
Openrefine tuto addition
template-and-toolsecology -
Update tutorial.md good link ?
fair
Reviewed 38 PRs
We love our community reviewing each other's work!
-
try to rePR phylodiversity tuto
template-and-toolsecology -
Add EDAM to OBS marine indicators tutorial
ecology -
new tutorial life traits ecoregionalization
template-and-toolsecology -
[New Tutorial] Taxonomic Analysis of eDNA
template-and-toolsecology -
OpenRefine Tutorial Update pt 2
ecology
News
External Links
Favourite Topics
Favourite Formats