Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Material

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows
A short introduction to Galaxy
tutorial
tutorial
From peaks to genes
Galaxy 101
Galaxy 101 for everyone
Introduction to Galaxy
Introduction to Genomics and Galaxy

Go a bit further

Explore the Galaxy a bit further after you've finished the basics.

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
How to reproduce published Galaxy analyses
NGS data logistics
Options for using Galaxy

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -p 8080:80 quay.io/galaxy/introduction-training

NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.

It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoDave Clements avatar Dave Clements

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoMelanie Föll avatar Melanie FöllDilmurat Yusuf avatar Dilmurat Yusuforcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoSaskia Hiltemann avatar Saskia HiltemannMarius van den Beek avatar Marius van den BeekChristopher Barnett avatar Christopher BarnettMichele Maroni avatar Michele Maroniorcid logoClemens Blank avatar Clemens BlankAnne Pajon avatar Anne Pajonorcid logoNicola Soranzo avatar Nicola SoranzoAndrea Bagnacani avatar Andrea Bagnacaniorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutSarah Peter avatar Sarah PeterJoachim Wolff avatar Joachim Wolfforcid logoAnna Syme avatar Anna SymeAnton Nekrutenko avatar Anton Nekrutenkoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoHelena Rasche avatar Helena Rascheorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDave Clements avatar Dave Clementsorcid logoNadia Goué avatar Nadia GouéOlha Nahorna avatar Olha NahornaAlaa Elghamry avatar Alaa Elghamry

Funders

This material was funded by:

Gallantries: Bridging Training Communities in Life Science, Environment and Health avatar Gallantries