Teresa Müller

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Using Galaxy and Managing your Data
• Topic: Introduction to Galaxy Analyses

Tutorials

• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 🧐
• Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants 🧐
• Sequence analysis / Quality Control 🧐
• Sequence analysis / Mapping 🧐
• Transcriptomics / Visualization of RNA-Seq results with Volcano Plot 🧐
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 🧐
• Statistics and machine learning / Deep Learning (Part 3) - Convolutional neural networks (CNN) 🧐
• Statistics and machine learning / Classification in Machine Learning 🧐
• Contributing to the Galaxy Training Material / Preview the GTN website as you edit your training material 📝
• Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Introduction to Galaxy Analyses / From peaks to genes 📝
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
• Introduction to Galaxy Analyses / A short introduction to Galaxy 🧐
• Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 🧐
• Assembly / ERGA post-assembly QC 🧐
• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data 🧐
• Assembly / Chloroplast genome assembly 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
• Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 📝 🧐
• Using Galaxy and Managing your Data / JupyterLab in Galaxy 📝 🧐
• Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
• Foundations of Data Science / One protein along the UniProt page 🧐
• Foundations of Data Science / Learning about one gene across biological resources and formats ✍️ 🧐
• Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing ✍️ 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
• Microbiome / Binning of metagenomic sequencing data 🧐
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data 🧐
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 🧐
• Single Cell / Generating a single cell matrix using Alevin 🧐
• Single Cell / Clustering 3K PBMCs with Scanpy 🧐
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) 🧐

Slides

• Statistics and machine learning / Fine-tuning Protein Language Model 🧐
• Statistics and machine learning / Regression in Machine Learning 🧐
• Statistics and machine learning / Introduction to Machine learning 🧐
• Statistics and machine learning / Classification in Machine Learning 🧐
• Single Cell / Single-cell Formats and Resources 🧐

FAQs

• How do I re-use equivalent jobs in Galaxy (aka Job Cache)?

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🎪 🧑‍🏫
• Galaxy Training Academy 2025 🎪 🧑‍🏫
• From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy 🎪 🧑‍🏫
• Galaxy Training Academy 2024 🎪 🧑‍🏫

GitHub Activity

github Issues Reported

41 Merged Pull Requests

See all of the github Pull Requests and github Commits by Teresa Müller.

• Update jupyter lab
  galaxy-interface
  faqs
  GTA
• Update gta event page
  template-and-tools
• Added admin survey as a news post
  news
• Event page gta added Climat track
  template-and-tools
• added FR server and Variant Analysis
  template-and-tools

Reviewed 53 PRs

We love our community reviewing each other's work!

• [Google Form] New Recording Submission! - TAPscan - Deeptivarshney
  sequence-analysis
  GTA
• Update jupyter lab
  galaxy-interface
  faqs
  GTA
• [Google Form] New Recording Submission! - Taxonomic Profiling - Tarnima-Omara
  microbiome
  GTA
• Update 2025-05-12-galaxy-academy-2025.md
  template-and-tools
• Update gta event page
  template-and-tools

News

External Links

Favourite Topics

Favourite Formats