Teresa Müller

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Contributing to the Galaxy Training Material / Running the GTN website online using GitHub CodeSpaces 📝
• Assembly / Chloroplast genome assembly 🧐
• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data 🧐
• Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
• Assembly / ERGA post-assembly QC 🧐
• Transcriptomics / Visualization of RNA-Seq results with Volcano Plot 🧐
• Microbiome / Binning of metagenomic sequencing data 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
• Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing ✍️ 🧐
• Foundations of Data Science / One protein along the UniProt page 🧐
• Foundations of Data Science / Learning about one gene across biological resources and formats ✍️ 🧐
• Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) 🧐
• Single Cell / Generating a single cell matrix using Alevin 🧐
• Single Cell / Clustering 3K PBMCs with Scanpy 🧐
• Introduction to Galaxy Analyses / From peaks to genes 📝
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 🧐
• Statistics and machine learning / Classification in Machine Learning 🧐
• Statistics and machine learning / Deep Learning (Part 3) - Convolutional neural networks (CNN) 🧐
• Sequence analysis / Mapping 🧐
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 🧐
• Sequence analysis / Quality Control 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 🧐

Slides

• Single Cell / Single-cell Formats and Resources 🧐

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🎪 🧑‍🏫
• Galaxy Training Academy 2024 🎪 🧑‍🏫

GitHub Activity

github Issues Reported

29 Merged Pull Requests

See all of the github Pull Requests and github Commits by Teresa Müller.

• New news
  news
• added news about feedback from for GTA2025
  news
• Biont software
  template-and-tools
• remove draft from uniprot tutorial
  data-science
• Update codespace
  contributing

Reviewed 36 PRs

We love our community reviewing each other's work!

• Fix event program for small screens
  template-and-tools
• Add an FAQ to explain how to prepare a tutorial to support tutorial mode
  faqs
• New events
  template-and-tools
• github [Google Form] New Recording Submission for Generating a single cell matrix using Alevin
  single-cell
• github [Google Form] New Recording Submission! Machine learning CNN
  statistics

News

External Links

Favourite Topics

Favourite Formats