Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Matthias Bernt avatar Matthias Berntorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruMarie Josse avatar Marie Josseorcid logoMartin Čech avatar Martin ČechLoraine Guéguen avatar Loraine Guéguenorcid logoJohn Davis avatar John Davisorcid logoWendi Bacon avatar Wendi BaconYouri Hoogstrate avatar Youri Hoogstrateorcid logoNate Coraor avatar Nate Coraororcid logoYvan Le Bras avatar Yvan Le BrasEstelle Ancelet avatar Estelle AnceletAysam Guerler avatar Aysam GuerlerStéphanie Legras avatar Stéphanie LegrasSimon Bray avatar Simon Brayorcid logoClemens Blank avatar Clemens Blankorcid logoAnthony Bretaudeau avatar Anthony BretaudeauLain Pavot avatar Lain Pavotorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena RascheCyril Monjeaud avatar Cyril MonjeaudDannon Baker avatar Dannon Bakerorcid logoJohn Chilton avatar John Chiltonorcid logoJohan Gustafsson avatar Johan GustafssonNitesh Turaga avatar Nitesh Turagaorcid logoCameron Hyde avatar Cameron Hydeorcid logoBérénice Batut avatar Bérénice BatutHervé Ménager avatar Hervé MénagerAssunta DeSanto avatar Assunta DeSantoRoss Lazarus avatar Ross Lazarusorcid logoPaul Zierep avatar Paul ZierepDave B. avatar Dave B.orcid logoAlex Ostrovsky avatar Alex OstrovskyErik Schill avatar Erik SchillClare Sloggett avatar Clare Sloggettorcid logoBjörn Grüning avatar Björn GrüningGildas Le Corguillé avatar Gildas Le Corguillé

Funding

These individuals or organisations provided funding support for the development of this resource