Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Hervé Ménager avatar Hervé Ménagerorcid logoMartin Čech avatar Martin ČechCyril Monjeaud avatar Cyril MonjeaudMatthias Bernt avatar Matthias Berntorcid logoJohan Gustafsson avatar Johan GustafssonYouri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle Anceletorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoBjörn Grüning avatar Björn GrüningGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoPaul Zierep avatar Paul ZierepAssunta DeSanto avatar Assunta DeSantoorcid logoNicola Soranzo avatar Nicola SoranzoStéphanie Legras avatar Stéphanie Legrasorcid logoCameron Hyde avatar Cameron HydeLain Pavot avatar Lain PavotErik Schill avatar Erik SchillAysam Guerler avatar Aysam GuerlerLoraine Guéguen avatar Loraine GuéguenNitesh Turaga avatar Nitesh Turagaorcid logoClemens Blank avatar Clemens BlankDave B. avatar Dave B.orcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena Rascheorcid logoJohn Chilton avatar John Chiltonorcid logoJohn Davis avatar John DavisDannon Baker avatar Dannon BakerClare Sloggett avatar Clare SloggettRoss Lazarus avatar Ross Lazarus

Funders

This material was funded by: