Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Simon Bray avatar Simon Brayorcid logoNicola Soranzo avatar Nicola SoranzoErik Schill avatar Erik Schillorcid logoBjörn Grüning avatar Björn Grüningorcid logoMartin Čech avatar Martin Čechorcid logoClemens Blank avatar Clemens BlankRoss Lazarus avatar Ross LazarusMatthias Bernt avatar Matthias Berntorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoHelena Rasche avatar Helena RascheStéphanie Legras avatar Stéphanie LegrasGildas Le Corguillé avatar Gildas Le CorguilléClare Sloggett avatar Clare Sloggettorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohn Davis avatar John Davisorcid logoBérénice Batut avatar Bérénice BatutYouri Hoogstrate avatar Youri HoogstrateHervé Ménager avatar Hervé MénagerNitesh Turaga avatar Nitesh TuragaEstelle Ancelet avatar Estelle AnceletDannon Baker avatar Dannon Bakerorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruLoraine Guéguen avatar Loraine GuéguenLain Pavot avatar Lain Pavotorcid logoYvan Le Bras avatar Yvan Le BrasAssunta DeSanto avatar Assunta DeSantoAysam Guerler avatar Aysam GuerlerDave B. avatar Dave B.orcid logoJohn Chilton avatar John Chiltonorcid logoSaskia Hiltemann avatar Saskia HiltemannCyril Monjeaud avatar Cyril Monjeaud

Funders

This material was funded by: