Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Community SIG
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul Ziereporcid logoBjörn Grüning avatar Björn GrüningClare Sloggett avatar Clare SloggettMatthias Bernt avatar Matthias Berntorcid logoJohn Davis avatar John Davisorcid logoMartin Čech avatar Martin ČechAysam Guerler avatar Aysam GuerlerRoss Lazarus avatar Ross LazarusDannon Baker avatar Dannon Bakerorcid logoJohn Chilton avatar John Chiltonorcid logoBérénice Batut avatar Bérénice BatutEstelle Ancelet avatar Estelle AnceletDave B. avatar Dave B.Youri Hoogstrate avatar Youri HoogstrateLain Pavot avatar Lain Pavotorcid logoClemens Blank avatar Clemens Blankorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruCyril Monjeaud avatar Cyril MonjeaudHervé Ménager avatar Hervé Ménagerorcid logoCameron Hyde avatar Cameron HydeNitesh Turaga avatar Nitesh TuragaSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoYvan Le Bras avatar Yvan Le BrasLoraine Guéguen avatar Loraine GuéguenErik Schill avatar Erik Schillorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia HiltemannStéphanie Legras avatar Stéphanie LegrasGildas Le Corguillé avatar Gildas Le CorguilléAssunta DeSanto avatar Assunta DeSantoorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoAlex Ostrovsky avatar Alex Ostrovsky

Funding

These individuals or organisations provided funding support for the development of this resource