Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

orcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoArmin Dadras avatar Armin Dadrasorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoJohn Chilton avatar John ChiltonClare Sloggett avatar Clare SloggettAysam Guerler avatar Aysam Guerlerorcid logoCristóbal Gallardo avatar Cristóbal GallardoRoss Lazarus avatar Ross LazarusHervé Ménager avatar Hervé Ménagerorcid logoSaskia Hiltemann avatar Saskia HiltemannNitesh Turaga avatar Nitesh TuragaGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon Brayorcid logoPaul Zierep avatar Paul ZierepDave B. avatar Dave B.William Durand avatar William Durandorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoWendi Bacon avatar Wendi Baconorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoHelena Rasche avatar Helena RascheLain Pavot avatar Lain Pavotorcid logoBérénice Batut avatar Bérénice BatutDenys Savchenko avatar Denys Savchenkoorcid logoClemens Blank avatar Clemens BlankDannon Baker avatar Dannon BakerAssunta DeSanto avatar Assunta DeSantoErik Schill avatar Erik Schillorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoNate Coraor avatar Nate Coraororcid logoGianmauro Cuccuru avatar Gianmauro CuccuruCyril Monjeaud avatar Cyril MonjeaudNiall Beard avatar Niall Beardorcid logoAndrei Variu avatar Andrei VariuMarie Josse avatar Marie Josseorcid logoMartin Čech avatar Martin Čechorcid logoBjörn Grüning avatar Björn Grüningorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohn Davis avatar John Davisorcid logoNicola Soranzo avatar Nicola SoranzoLoraine Guéguen avatar Loraine GuéguenStéphanie Legras avatar Stéphanie LegrasYouri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle AnceletMatthias Bernt avatar Matthias Bernt

Funding

These individuals or organisations provided funding support for the development of this resource