Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

orcid logoGianmauro Cuccuru avatar Gianmauro CuccuruYouri Hoogstrate avatar Youri HoogstrateMatthias Bernt avatar Matthias BerntCyril Monjeaud avatar Cyril Monjeaudorcid logoŁukasz Opioła avatar Łukasz OpiołaMarie Josse avatar Marie JosseErik Schill avatar Erik SchillHervé Ménager avatar Hervé Ménagerorcid logoClemens Blank avatar Clemens Blankorcid logoHelena Rasche avatar Helena RascheWilliam Durand avatar William Durandorcid logoWendi Bacon avatar Wendi BaconAssunta DeSanto avatar Assunta DeSantoEstelle Ancelet avatar Estelle Anceletorcid logoNate Coraor avatar Nate CoraorDenys Savchenko avatar Denys SavchenkoClare Sloggett avatar Clare Sloggettorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutAysam Guerler avatar Aysam Guerlerorcid logoJohn Davis avatar John DavisLain Pavot avatar Lain PavotDannon Baker avatar Dannon Bakerorcid logoSaskia Hiltemann avatar Saskia HiltemannNitesh Turaga avatar Nitesh TuragaNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola SoranzoLoraine Guéguen avatar Loraine GuéguenRoss Lazarus avatar Ross Lazarusorcid logoJohn Chilton avatar John Chiltonorcid logoMartin Čech avatar Martin ČechDave B. avatar Dave B.orcid logoYvan Le Bras avatar Yvan Le BrasStéphanie Legras avatar Stéphanie Legrasorcid logoCameron Hyde avatar Cameron Hydeorcid logoArmin Dadras avatar Armin Dadrasorcid logoAndrei Variu avatar Andrei VariuSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoPaul Zierep avatar Paul Ziereporcid logoAlex Ostrovsky avatar Alex OstrovskyGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource