Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoMateo Boudet avatar Mateo Boudetorcid logoAnne Fouilloux avatar Anne FouillouxKatherine Cox avatar Katherine CoxRobert Meller avatar Robert MellerSwathi Nataraj avatar Swathi NatarajVerena Moosmann avatar Verena MoosmannSimon Bray avatar Simon BrayNatalie Kucher avatar Natalie KucherJoachim Wolff avatar Joachim WolffEric Tvedte avatar Eric Tvedteorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang MaierWilliam Durand avatar William DurandElizabeth Humphries avatar Elizabeth Humphriesorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rascheorcid logoClea Siguret avatar Clea Siguretorcid logoMaria Doyle avatar Maria Doyleorcid logoErwan Corre avatar Erwan CorreAnup Kumar avatar Anup Kumarorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCameron Hyde avatar Cameron Hydeorcid logoSaskia Hiltemann avatar Saskia HiltemannFrederick Tan avatar Frederick Tanorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn Grüningorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAlexandre Cormier avatar Alexandre CormierElischa Berger avatar Elischa Bergerorcid logoNicola Soranzo avatar Nicola SoranzoMatthias Bernt avatar Matthias Berntorcid logoLaura Leroi avatar Laura LeroiAva Hoffman avatar Ava Hoffmanorcid logoTeresa Müller avatar Teresa MüllerCandace Savonen avatar Candace Savonenorcid logoStéphanie Robin avatar Stéphanie Robin

Funding

These individuals or organisations provided funding support for the development of this resource

References