Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoSaskia Hiltemann avatar Saskia HiltemannSimon Bray avatar Simon BrayCandace Savonen avatar Candace Savonenorcid logoDeepti Varshney avatar Deepti VarshneyRobert Meller avatar Robert Mellerorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCameron Hyde avatar Cameron HydeWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoColine Royaux avatar Coline Royauxorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClea Siguret avatar Clea SiguretJoachim Wolff avatar Joachim WolffSwathi Nataraj avatar Swathi Natarajorcid logoTeresa Müller avatar Teresa MüllerKatherine Cox avatar Katherine CoxAnup Kumar avatar Anup KumarEric Tvedte avatar Eric TvedteVerena Moosmann avatar Verena MoosmannElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick Tanorcid logoErwan Corre avatar Erwan CorreMatthias Bernt avatar Matthias Berntorcid logoMaria Doyle avatar Maria Doyleorcid logoBjörn Grüning avatar Björn Grüningorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMateo Boudet avatar Mateo Boudetorcid logoHelena Rasche avatar Helena RascheNatalie Kucher avatar Natalie Kucherorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoLaura Leroi avatar Laura LeroiAva Hoffman avatar Ava Hoffmanorcid logoBérénice Batut avatar Bérénice Batutorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAlexandre Cormier avatar Alexandre CormierElizabeth Humphries avatar Elizabeth Humphries

Funding

These individuals or organisations provided funding support for the development of this resource

References