Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

Anup Kumar avatar Anup Kumarorcid logoColine Royaux avatar Coline RoyauxJoachim Wolff avatar Joachim Wolfforcid logoAnthony Bretaudeau avatar Anthony BretaudeauElizabeth Humphries avatar Elizabeth HumphriesKatherine Cox avatar Katherine Coxorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoErwan Corre avatar Erwan Correorcid logoAnne Fouilloux avatar Anne FouillouxVerena Moosmann avatar Verena MoosmannWilliam Durand avatar William Durandorcid logoTeresa Müller avatar Teresa MüllerEric Tvedte avatar Eric Tvedteorcid logoSaskia Hiltemann avatar Saskia HiltemannAva Hoffman avatar Ava Hoffmanorcid logoNicola Soranzo avatar Nicola SoranzoNatalie Kucher avatar Natalie Kucherorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaria Doyle avatar Maria DoyleMatthias Bernt avatar Matthias BerntElischa Berger avatar Elischa BergerCandace Savonen avatar Candace Savonenorcid logoCameron Hyde avatar Cameron Hydeorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBjörn Grüning avatar Björn Grüningorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMateo Boudet avatar Mateo Boudetorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena RascheRobert Meller avatar Robert Mellerorcid logoAnika Erxleben avatar Anika ErxlebenFrederick Tan avatar Frederick TanSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura Leroiorcid logoClea Siguret avatar Clea Siguretorcid logoDeepti Varshney avatar Deepti VarshneySwathi Nataraj avatar Swathi Nataraj

Funding

These individuals or organisations provided funding support for the development of this resource

References