Galaxy Server administration

Here you can learn everything you need to become a Pro Galaxy Administrator! These resources cover everything from setup, to configuration, to monitoring, to customisation.

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Jobs & Scheduling

Learn how to use DRMAA and other resources to schedule your jobs on clusters

Data Management & Reference Data

Manage data like a pro: tips on scaling to 1PB and more.

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Running Galaxy on the Cloud

If acronyms like EKS, EC2, GCP, ECS, K8S mean anything to you, then you've found where your home! Run Galaxy on someone else's computer with Cloud based tutorials

Maintaining a Production Galaxy

Deployed Galaxy? Now what? All of the knowledge you need to maintain it long term.

Monitoring

Monitor Galaxy like UseGalaxy.eu, learn the ins and outs of monitoring

Deprecated Tutorials

Please do not run these. They are outdated and for historical, archival purposes only.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Nate Coraor

Björn Grüning

Martin Čech

Mira Kuntz

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Abdulrahman Azab

Saskia Hiltemann

Nicola Soranzo

John Chilton

Mira Kuntz

Peter van Heusden

Gianmauro Cuccuru

Yvan Le Bras

Dave B.

Paul De Geest

Nuwan Goonasekera

Armin Dadras

Dawa Ometto

Martin Čech

Anthony Bretaudeau

José Manuel Domínguez

Alex Mahmoud

Bérénice Batut

Hans-Rudolf Hotz

Helena Rasche

Marie Josse

Catherine Bromhead

Tomas Vondrak

Kweyakie Afi Blebo

Valentin Marcon

Vlad Visan

Torfinn Nome

Björn Grüning

Cristóbal Gallardo

Laila Los

Lucille Delisle

Daniel Blankenberg

Matthias Bernt

Tomas Klingström

Enis Afgan

Bartosz Walkowicz

Edwin den Haas

Mélanie Petera

John Davis

Pablo Moreno

Simon Gladman

Niall Beard

Łukasz Opioła

Anne Fouilloux

Nate Coraor

Tunc Kayikcioglu

Gildas Le Corguillé

Mirela Minkova

Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource

CINECA

SURF

The University of Melbourne

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

de.NBI

Melbourne Bioinformatics

UFR

Australian BioCommons

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

Fair-Ease

FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.