Anthony Bretaudeau

Affiliations

ELIXIR Europe avatar ELIXIR Europe

Former Affiliations

EuroScienceGateway avatar EuroScienceGatewayGallantries: Bridging Training Communities in Life Science, Environment and Health avatar Gallantries

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

Tutorials

Slides

Video Recordings

Events



GitHub Activity

Issues Reported

68 Merged Pull Requests

See all of the Pull Requests and Commits by Anthony Bretaudeau.

Reviewed 72 PRs

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News

Screenshot of Apollo embedded within the Galaxy Europe interface, Apollo shows a couple of gene tracks.
New Tutorial: Genome Annotation with Apollo
Anthony Bretaudeau avatar Helena Rasche avatar Nathan Dunn avatar Mateo Boudet avatar
4 June 2021
After two years, the Galaxy Genome Annotation team has finally finished their much awaited tutorial on doing Genome Annotation in Galaxy! Genome annotation is a time consuming and largely manual process as it requires the synthesis of a significant amount of varied information to make inferences, a process tha cannot be accomplished without an interactive editor. To support this, Apollo was deployed on UseGalaxy.eu. Over the past two years the GGA project has pushed forward apollo and tooling around it, and it finally culminates in this look at how to annotated your genomes in Apollo.
new tutorial genome-annotation
GTN logo with a multi-coloured star and the words Galaxy Training Network
New Topic: Data Science Survival Kit
Saskia Hiltemann avatar Helena Rasche avatar Bérénice Batut avatar Anthony Bretaudeau avatar Yvan Le Bras avatar Fotis E. Psomopoulos avatar The Carpentries avatar
12 October 2021
As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. This topic will include tutorials covering things such as:
gtn infrastructure new topic data-science
Screenshot of a Funannotate annotation displayed with JBrowse, within Galaxy.
New Tutorials: PacBio data QC and Genome Assembly, and Genome Annotation with Funannotate
Anthony Bretaudeau avatar Alexandre Cormier avatar Laura Leroi avatar Erwan Corre avatar Stéphanie Robin avatar
1 December 2021
We have just finished a new collection of training material for genome assembly and annotation! You now have access to slides and tutorials, focused on the complete analysis of the genome of a fungus species (Mucor mucedo).
new tutorial assembly genome-annotation
GTN logo with a multi-coloured star and the words Galaxy Training Network
GTN ❤️ GMOD
Helena Rasche avatar Anthony Bretaudeau avatar
29 February 2024
Building upon the work previously done for the SARS-Cov-2 Topic we have further expanded the ‘tag based topics’ to support a new GMOD topic.
new topic new feature genome-annotation GMOD
graphic showing the 10 misconceptions and their rebuttals
New Paper! Ten common misconceptions about Galaxy (and why they are wrong!)
Wendi Bacon avatar Bérénice Batut avatar Sanjay Kumar Srikakulam avatar Paul Zierep avatar Anthony Bretaudeau avatar Björn Grüning avatar Gildas Le Corguillé avatar Helge Hecht avatar John Davis avatar Hans-Rudolf Hotz avatar Beatriz Serrano-Solano avatar
23 February 2026
This is an external post, please follow the link to read it.
paper
Anthony Bretaudeau avatar

External Links

Training Philosophy
abretaud
anthony.bretaudeau@irisa.fr
abretaud:matrix.org
https://genomic.social/@abretaud
abretaud.bsky.social
0000-0003-0914-2470
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