GTN Materials Search

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Identifier Type Title Topic Level Length
GTN:N00105 News SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?
gtnsingle-cell
GTN:N00098 News SPOC CoFest 2024: How did it go?
gtnsingle-cell
GTN:N00092 News Simplifying GTN contribution with Google Forms
gtn infrastructurenew featureautomationcontributing
GTN:N00068 News Simplified GTN News submission via Google Form
contributingcommunity
GTN:N00023 News Got a minute? Take our survey about Galaxy for training and have your say!
feedbackcontributing
GTN:F00437 FAQs Add Toolshed category to a tool
 Galaxy FAQ
GTN:F00278 FAQs What is the principle of an enrichment analysis?
 Proteomics
GTN:F00217 FAQs UCSC - I fetched data from a remote website but now I’m logged out of Galaxy and my data is gone?
 Introduction to Galaxy Analyses
GTN:F00279 FAQs What is Gene Ontology (GO)?
 Proteomics
GTN:F00419 FAQs What is the Galaxy Governance Structure?
 Galaxy Community Building
TBA Slides Introduction to Synthetic Biology
 Synthetic Biology
TBA Slides Galaxy from a developer point of view
 Development in Galaxy
TBA Slides Introduction to Muon Spectroscopy
 Materials Science
TBA FAQs How do I manage my Galaxy storage?
 Galaxy FAQ
TBA FAQs How do I manage my repositories on Galaxy?
 Galaxy FAQ
GTN:F00210 FAQs Got lost along the way?
 Galaxy Server administration
GTN:F00302 FAQs Which search algorithms are recommended for searching the metaproteomics data?
 Proteomics
GTN:S00124 Slides GO Enrichment Analysis on Single-Cell RNA-Seq Data
 Single Cell 1h
GTN:S00029 Slides Deeper look into Genome Assembly algorithms
 Assembly Intermediate
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Introducción al análisis de datos de scRNA-seq
single-cell		 Single Cell 30m
TBA Slides Una breve introducción a Galaxy
 Introduction to Galaxy Analyses
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Una introducción al análisis de datos scRNA-seq
single-cell		 Single Cell Intermediate 30m
TBA Slides Una Breve Introducción a Galaxy
 Introduction to Galaxy Analyses
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Lorum Ipsum
testpagelanguage		 Intermediate 42M
TBA Hands-on Setting up a dev Onedata instance
storage		 Development in Galaxy Introductory 20m
TBA Hands-on Preview the GTN website as you edit your training material
Choose your own AdventureGitPodCodeSpacesCommand-line		 Contributing to the Galaxy Training Material 20m
TBA Hands-on Contributing to the Galaxy Training Network with GitHub
 Contributing to the Galaxy Training Material 30m
TBA Hands-on Dataset construction for bacterial comparative genomics
microgalaxywork-in-progress		 Genome Annotation Introductory 1H
TBA Hands-on Bacterial pangenomics
 Genome Annotation Introductory 1H
TBA Hands-on Genome annotation with Braker3
eukaryotaBraker3jbrowse1		 Genome Annotation Intermediate 8h
TBA Hands-on Bacterial genome quality control
microgalaxywork-in-progress		 Genome Annotation Introductory 1H
TBA Hands-on Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology		 Sequence analysis Introductory 1H
TBA Hands-on Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants		 Sequence analysis 2H
TBA Hands-on Regulations/standards for AI using DOME
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Generative Artificial Intelligence and Large Langage Model using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Foundational Aspects of Machine Learning using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Deep Learning (without Generative Artificial Intelligence) using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Text-Mining Differences in Chinese Newspaper Articles
HumanitiesText_mining		 Statistics and machine learning Introductory 1H
TBA Hands-on Neural networks using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Building the LORIS LLR6 PanCancer Model Using PyCaret
LORIS Score ModelMachine LearningPyCaret		 Statistics and machine learning Intermediate 1H
TBA Hands-on Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
 Imaging Intermediate 1H
TBA Hands-on Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
RNAsmFISHbioimaging		 Imaging Introductory 30m
TBA Hands-on Collaboration with JupyterGIS
 Climate 30M
GTN:T00428 Hands-on Analyse Argo data
earth-systemoceanpangeoargo		 Climate 1H
GTN:T00456 Hands-on GO Enrichment Analysis on Single-Cell RNA-Seq Data
single cellGO enrichment		 Single Cell 3H
TBA Hands-on Clustering 3K PBMCs with Seurat
10x		 Single Cell Introductory 8H
TBA Hands-on Evaluating Reference Data for Bulk RNA Deconvolution
transcriptomics		 Single Cell 2H
TBA Hands-on Pseudobulk Analysis with Decoupler and EdgeR
transcriptomicspseudobulk		 Single Cell 3H
TBA Hands-on Multi-sample batch correction with Harmony and SnapATAC2
10xepigenetics		 Single Cell Intermediate 4H
GTN:T00291 Hands-on GO Enrichment Analysis
 Transcriptomics 1h
TBA Hands-on Importing (uploading) data from Onedata
storage		 Using Galaxy and Managing your Data Introductory 15m
TBA Hands-on Exporting to Onedata remote
storage		 Using Galaxy and Managing your Data Introductory 5m
TBA Hands-on Getting started with Onedata distributed storage
storage		 Using Galaxy and Managing your Data Introductory 20m
TBA Hands-on Onedata user-owned storage
storage		 Using Galaxy and Managing your Data Introductory 15m
TBA Hands-on Neoantigen 5: Variant Annotation
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 1: Fusion-Database-Generation
label-free		 Proteomics 2H
TBA Hands-on Single Cell Proteomics data analysis with bioconductor-scp
 Proteomics 3H
TBA Hands-on Neoantigen 6: Predicting HLA Binding
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 3: Database merge and FragPipe discovery
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 4: PepQuery2 Verification
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 7: IEDB binding PepQuery Validated Neopeptides
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 2: Non-Reference-Database-Generation
label-free		 Proteomics 3H
TBA Hands-on Multiomics data analysis using MultiGSEA
multi-omicstranscriptomicsproteomicsmetabolomics		 Proteomics 1H
TBA Hands-on Phylogenetic analysis for bacterial comparative genomics
microgalaxywork-in-progress		 Evolution Introductory 1H
TBA Hands-on Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage		 Galaxy Server administration Intermediate 40m
TBA Hands-on Galaxy usage on SURF Research Cloud
deploying		 Galaxy Server administration Introductory 30m
TBA Hands-on Adding file-sources to Galaxy
earth-systemoceandatawork-in-progress		 Galaxy Server administration 15m
TBA Hands-on Pulsar usage on SURF Research Cloud
deploying		 Galaxy Server administration Introductory 30m
TBA Hands-on Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
 Microbiome Introductory 1H
TBA Hands-on Creating community content
 Galaxy Community Building 30M
TBA Hands-on Cleaning GBIF data using OpenRefine
 Ecology 0h45m
TBA Hands-on Data submission using ENA upload Tool
 Ecology 2h
TBA Hands-on Python - Warm-up for statistics and machine learning
elixirai-mlwork-in-progressjupyter-notebook		 Foundations of Data Science Introductory 1H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Filtrado, representación y exploración de secuenciación de ARN de células únicas
single-cell10xpaper-replicationinteractive-toolstranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Breve introducción a Galaxy - en español
 Introduction to Galaxy Analyses Introductory 30m
TBA Hands-on Production d'indicateurs champs de bloc
 Ecology 1H
GTN:F00220 FAQs I got slightly different numbers than were in the tutorial
 Introduction to Galaxy Analyses
GTN:F00112 FAQs Forgot Password
 Galaxy FAQ
GTN:W00022 Workflow Analyse Argo data
Climate
GTN:W00287 Workflow GO Enrichment Workflow
 Single Cell
GTN:W00238 Workflow GO Enrichment Workflow
 Transcriptomics
GTN:W00177 Workflow Secreted Proteins Via GO Annotation And WoLF PSORT For shCTSB Paper
 Proteomics
TBA Workflow Metagenomics assembly tutorial workflow
 Assembly
TBA Workflow workflow-generate-dataset-for-assembly-tutorial
 Assembly
TBA Workflow WF2_Discovery-Workflow
 Microbiome
TBA Workflow WF3_VERIFICATION_WORKFLOW
 Microbiome
TBA Workflow WF4_Quantitation_Workflow
 Microbiome
TBA Workflow WF1_Database_Generation_Workflow
 Microbiome
TBA Workflow WF5_Data_Interpretation_Worklow
 Microbiome
TBA Workflow Data management in Medicinal Chemistry workflow
 FAIR Data, Workflows, and Research
TBA Workflow GTN Tutorial: Data manipulation Olympics - all steps and exercises
 Foundations of Data Science